ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2iryB2 - ECOD Domain | ECOD

ECOD/Domains/e2iryB2

e2iryB2

UID: 001258852

PDB

Range: B:9-75,B:99-291
PDB: 2IRY chain B(all domains)
UniProt: P9WNV3 (all domains)
Gene: ligD

Molecule: DNA ligase-like protein Rv0938/MT0965

3D Structure

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Related Domains

Browse other domains in LigD_Prim-Pol →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupPrim-pol domain(862)

HH-groupPrim-pol domain(862.1)

TT-groupPrim-pol domain(862.1.1)

FFamilyLigD_Prim-Pol(862.1.1.5)

Ligands

in contact, ≤ 4 Å

2'-Deoxyguanosine-5'-TriphosphateDGT
drugDrugBank DB02181
MANGANESE (II) IONMN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF21686LigD_Prim-Pol

LigD, primase-polymerase domain

ClanCL0243AEP

External Links

ECOD PDB View: 2IRY RCSB PDB: 2IRY PDBe: 2IRY UniProt: P9WNV3

Downloads

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