ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2farA2 - ECOD Domain | ECOD

ECOD/Domains/e2farA2

e2farA2

UID: 001258868

PDB

Range: A:543-610,A:634-837
PDB: 2FAR chain A(all domains)
UniProt: Q9I1X7 (all domains)
Gene: ligD

Molecule: probable ATP-dependent DNA ligase

3D Structure

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Related Domains

Browse other domains in LigD_Prim-Pol →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupPrim-pol domain(862)

HH-groupPrim-pol domain(862.1)

TT-groupPrim-pol domain(862.1.1)

FFamilyLigD_Prim-Pol(862.1.1.5)

Ligands

in contact, ≤ 4 Å

dATPDTP
drugDrugBank DB03222
MANGANESE (II) IONMN
metal

+ 1 additive (Sulfate ion)

Pfam Families

PF21686LigD_Prim-Pol

LigD, primase-polymerase domain

ClanCL0243AEP

External Links

ECOD PDB View: 2FAR RCSB PDB: 2FAR PDBe: 2FAR UniProt: Q9I1X7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.