ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3vivB2 - ECOD Domain | ECOD

ECOD/Domains/e3vivB2

e3vivB2

UID: 001259912

PDB

Range: B:19-236
PDB: 3VIV chain B(all domains)
UniProt: O59179 (all domains)
Gene: PH1510

Molecule: 441aa long hypothetical nfeD protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in NfeD1b_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupClpP/crotonase(2486)

HH-groupClpP/crotonase(2486.1)

TT-groupClpP/crotonase(2486.1.1)

FFamilyNfeD1b_N(2486.1.1.17)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Imidazole)

GlycerinGOL
DrugBank DB09462
ImidazoleIMD
DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF25145NfeD1b_N

NfeD1b, N-terminal domain

ClanCL0127ClpP_crotonase

External Links

ECOD PDB View: 3VIV RCSB PDB: 3VIV PDBe: 3VIV UniProt: O59179

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure