ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1qhdA1 - ECOD Domain | ECOD

ECOD/Domains/e1qhdA1

e1qhdA1

UID: 000001263

RepresentativePDB

Range: A:149-332
PDB: 1QHD chain A(all domains)
UniProt: P04509 (all domains)

Molecule: VIRAL CAPSID VP6

3D Structure

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Related Domains

Browse other domains in Rota_Capsid_VP6 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupViral protein domain(10.5)

TT-groupViral protein domain(10.5.1)

FFamilyRota_Capsid_VP6(10.5.1.3)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Chloride ionCL
Zinc ionZN

Pfam Families

PF00980Rota_Capsid_VP6

Rotavirus major capsid protein VP6

External Links

ECOD PDB View: 1QHD RCSB PDB: 1QHD PDBe: 1QHD UniProt: P04509

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.