ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3zn6B2 - ECOD Domain | ECOD

ECOD/Domains/e3zn6B2

e3zn6B2

UID: 001264671

PDB

Range: B:21-165
PDB: 3ZN6 chain B(all domains)
UniProt: C8CHL4 (all domains)

Molecule: VP16

3D Structure

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Related Domains

Browse other domains in VP16-like →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyVP16-like(10.2.1.62)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Sodium ionNA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF22024VP16-like

Major capsid protein VP16-like

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 3ZN6 RCSB PDB: 3ZN6 PDBe: 3ZN6 UniProt: C8CHL4

Downloads

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