ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4kq6H2 - ECOD Domain | ECOD

ECOD/Domains/e4kq6H2

e4kq6H2

UID: 001265205

PDB

Range: H:11-168
PDB: 4KQ6 chain H(all domains)
UniProt: Q6FXA8 (all domains)
Gene: RIB4

Molecule: 6,7-dimethyl-8-ribityllumazine synthase

3D Structure

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Related Domains

Browse other domains in DMRL_synthase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupLumazine synthase(2007.1.13)

FFamilyDMRL_synthase(2007.1.13.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00885DMRL_synthase

6,7-dimethyl-8-ribityllumazine synthase

External Links

ECOD PDB View: 4KQ6 RCSB PDB: 4KQ6 PDBe: 4KQ6 UniProt: Q6FXA8

Downloads

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