ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2yneC3 - ECOD Domain | ECOD

ECOD/Domains/e2yneC3

e2yneC3

UID: 001267589

PDB

Range: C:48-210
PDB: 2YNE chain C(all domains)
UniProt: A5K1A2 (all domains)
Gene: PVX_085815

Molecule: GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE

3D Structure

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Related Domains

Browse other domains in NMT →

Classification

AArchitecturea+b three layers(a.12)

XX-groupNat/Ivy(213)

HH-groupAcyl-CoA N-acyltransferases (Nat)(213.1)

TT-groupAcyl-CoA N-acyltransferases (Nat)(213.1.1)

FFamilyNMT(213.1.1.4)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Magnesium ionMG
metal
2-oxopentadecyl-CoANHW

Pfam Families

Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain

ClanCL0257Acetyltrans

External Links

ECOD PDB View: 2YNE RCSB PDB: 2YNE PDBe: 2YNE UniProt: A5K1A2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

2-(3-piperidin-4-yloxy-1-benzothiophen-2-yl)-5-[(1,3,5-trimethylpyrazol-4-yl)methyl]-1,3,4-oxadiazoleYNE

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS
DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.