ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3nkhB2 - ECOD Domain | ECOD

ECOD/Domains/e3nkhB2

e3nkhB2

UID: 001267971

PDB

Range: B:158-220
PDB: 3NKH chain B(all domains)
UniProt: A8Z1E8 (all domains)

Molecule: Integrase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Phage_integrase →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupDNA breaking-rejoining enzymes(101.1.8)

FFamilyPhage_integrase(101.1.8.1)

Ligands

in contact, ≤ 4 Å

(4R)-2-METHYLPENTANE-2,4-DIOLMRD

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Sulfate ion)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Sulfate ionSO4

Pfam Families

PF00589Phage_integrase

Phage integrase family

ClanCL0382DNA-mend

External Links

ECOD PDB View: 3NKH RCSB PDB: 3NKH PDBe: 3NKH UniProt: A8Z1E8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.