ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4e04B4 - ECOD Domain | ECOD

ECOD/Domains/e4e04B4

e4e04B4

UID: 001271910

PDB

Range: B:11-121
PDB: 4E04 chain B(all domains)
UniProt: Q6N5G3 (all domains)
Gene: phyB1

Molecule: Bacteriophytochrome (Light-regulated signal transduction histidine kinase), PhyB1

3D Structure

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Related Domains

Browse other domains in PAS_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupsensor domains(223.1)

TT-groupsensor domains(223.1.1)

FFamilyPAS_2(223.1.1.12)

Ligands

in contact, ≤ 4 Å

3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acidLBV

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PAS fold

ClanCL0183PAS_Fold

External Links

ECOD PDB View: 4E04 RCSB PDB: 4E04 PDBe: 4E04 UniProt: Q6N5G3

Downloads

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