ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3nkeB2 - ECOD Domain | ECOD

ECOD/Domains/e3nkeB2

e3nkeB2

UID: 001273899

PDB

Range: B:92-281
PDB: 3NKE chain B(all domains)
UniProt: Q46896 (all domains)
Gene: ygbT

Molecule: protein ygbT

3D Structure

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Related Domains

Browse other domains in Cas_Cas1 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupCas1(3239)

HH-groupCas1(3239.1)

TT-groupCas1(3239.1.1)

FFamilyCas_Cas1(3239.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (1,2-ETHANEDIOL, Sulfate ion)

1,2-ETHANEDIOLEDO
Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01867Cas_Cas1

CRISPR associated protein Cas1

External Links

ECOD PDB View: 3NKE RCSB PDB: 3NKE PDBe: 3NKE UniProt: Q46896

Downloads

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