ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3melD3 - ECOD Domain | ECOD

ECOD/Domains/e3melD3

e3melD3

UID: 001276788

PDB

Range: D:2-133
PDB: 3MEL chain D(all domains)
UniProt: Q82ZE3 (all domains)
Gene: EF_3117

Molecule: Thiamine diphosphokinase

3D Structure

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Related Domains

Browse other domains in TPK_catalytic →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin pyrophosphokinase, catalytic domain(7562)

HH-groupThiamin pyrophosphokinase, catalytic domain(7562.1)

TT-groupThiamin pyrophosphokinase, catalytic domain(7562.1.1)

FFamilyTPK_catalytic(7562.1.1.1)

Ligands

in contact, ≤ 4 Å

FE (III) IONFE
metal
Thiamine diphosphateTPP
Magnesium ionMG
metalwithin 5 Å only

Pfam Families

PF04263TPK_catalytic

Thiamin pyrophosphokinase, catalytic domain

ClanCL0948GT29-like

External Links

ECOD PDB View: 3MEL RCSB PDB: 3MEL PDBe: 3MEL UniProt: Q82ZE3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Glycerol, Sulfate ion)

GlycerolGOL
Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.