ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3dvaD4 - ECOD Domain | ECOD

ECOD/Domains/e3dvaD4

e3dvaD4

UID: 001278218

PDB

Range: D:1-188
PDB: 3DVA chain D(all domains)
UniProt: P21874 (all domains)
Gene: pdhB

Molecule: Pyruvate dehydrogenase E1 component subunit beta

3D Structure

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Related Domains

Browse other domains in Transket_pyr →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyTransket_pyr(7574.1.1.8)

Ligands

in contact, ≤ 4 Å

Potassium ionK
metal
2-{4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-METHYLTHIOPHEN-2-YL}ETHYL TRIHYDROGEN DIPHOSPHATETPW
Magnesium ionMG

Pfam Families

PF02779Transket_pyr

Transketolase, pyrimidine binding domain

ClanCL0254THDP-binding

External Links

ECOD PDB View: 3DVA RCSB PDB: 3DVA PDBe: 3DVA UniProt: P21874

Downloads

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metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.