ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3upoB2 - ECOD Domain | ECOD

ECOD/Domains/e3upoB2

e3upoB2

UID: 001278455

PDB

Range: B:129-185,B:210-218,B:344-488
PDB: 3UPO chain B(all domains)
UniProt: P9WKD1 (all domains)
Gene: pbpA

Molecule: Penicillin-binding protein A

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

Open form - penicillin gPNM

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 3UPO RCSB PDB: 3UPO PDBe: 3UPO UniProt: P9WKD1

Downloads

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