ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2v2fF2 - ECOD Domain | ECOD

ECOD/Domains/e2v2fF2

e2v2fF2

UID: 001278481

PDB

Range: F:268-366,F:471-651
PDB: 2V2F chain F(all domains)
UniProt: Q9RET4 (all domains)
Gene: pbp1a

Molecule: PENICILLIN BINDING PROTEIN 1A

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

Barium ionBA
metal

+ 1 additive (2-(N-morpholino)ethanesulfonic acid)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Shown in the structure viewer.

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 2V2F RCSB PDB: 2V2F PDBe: 2V2F UniProt: Q9RET4

Downloads

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Drug annotations from DrugDomain.