ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vc1H3 - ECOD Domain | ECOD

ECOD/Domains/e3vc1H3

e3vc1H3

UID: 001278922

PDB

Range: H:15-292
PDB: 3VC1 chain H(all domains)
UniProt: Q9F1Y5 (all domains)
Gene: SCO7701

Molecule: Geranyl diphosphate 2-C-methyltransferase

3D Structure

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Related Domains

Browse other domains in Methyltransf_11 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_11(2003.1.5.66)

Ligands

in contact, ≤ 4 Å

S-[(2E)-3,7-DIMETHYLOCTA-2,6-DIENYL] TRIHYDROGENTHIODIPHOSPHATEGST
drugDrugBank DB04702
S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752

Pfam Families

PF08241Methyltransf_11

Methyltransferase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3VC1 RCSB PDB: 3VC1 PDBe: 3VC1 UniProt: Q9F1Y5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ionMG

metal

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.