ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3vc1E3 - ECOD Domain | ECOD

ECOD/Domains/e3vc1E3

e3vc1E3

UID: 001278924

PDB

Range: E:15-292
PDB: 3VC1 chain E(all domains)
UniProt: Q9F1Y5 (all domains)
Gene: SCO7701

Molecule: Geranyl diphosphate 2-C-methyltransferase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Methyltransf_11 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_11(2003.1.5.66)

Ligands

in contact, ≤ 4 Å

S-[(2E)-3,7-DIMETHYLOCTA-2,6-DIENYL] TRIHYDROGENTHIODIPHOSPHATEGST
drugDrugBank DB04702
S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752

Pfam Families

PF08241Methyltransf_11

Methyltransferase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3VC1 RCSB PDB: 3VC1 PDBe: 3VC1 UniProt: Q9F1Y5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ionMG

metal

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.