ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2i7cB2 - ECOD Domain | ECOD

ECOD/Domains/e2i7cB2

e2i7cB2

UID: 001279088

PDB

Range: B:59-281
PDB: 2I7C chain B(all domains)
UniProt: Q8II73 (all domains)
Gene: PF3D7_1129000

Molecule: Spermidine synthase

3D Structure

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Related Domains

Browse other domains in Spermine_synth →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilySpermine_synth(2003.1.5.13)

Ligands

in contact, ≤ 4 Å

S-Adenosyl-1,8-Diamino-3-ThiooctaneAAT
drugDrugBank DB02844

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF01564Spermine_synth

Spermine/spermidine synthase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 2I7C RCSB PDB: 2I7C PDBe: 2I7C UniProt: Q8II73

Downloads

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Drug annotations from DrugDomain.