ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4fp9D2 - ECOD Domain | ECOD

ECOD/Domains/e4fp9D2

e4fp9D2

UID: 001279526

PDB

Range: D:39-94,D:116-384
PDB: 4FP9 chain D(all domains)
UniProt: Q96CB9 (all domains)
Gene: NSUN4

Molecule: methyltransferase NSUN4

3D Structure

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Related Domains

Browse other domains in Methyltr_RsmB-F →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltr_RsmB-F(2003.1.5.6)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF01189Methyltr_RsmB-F

16S rRNA methyltransferase RsmB/F

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4FP9 RCSB PDB: 4FP9 PDBe: 4FP9 UniProt: Q96CB9

Downloads

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Drug annotations from DrugDomain.