ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4c10C1 - ECOD Domain | ECOD

ECOD/Domains/e4c10C1

e4c10C1

UID: 001280920

PDB

Range: C:1-242
PDB: 4C10 chain C(all domains)
UniProt: A9X4C2 (all domains)

Molecule: VP2

3D Structure

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Related Domains

Browse other domains in Rhv →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv(10.2.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Sodium ionNA
metal
SphingosineSPH
within 5 Å only

Shown in the structure viewer.

Pfam Families

picornavirus capsid protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 4C10 RCSB PDB: 4C10 PDBe: 4C10 UniProt: A9X4C2

Downloads

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Drug annotations from DrugDomain.