ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4od5D1 - ECOD Domain | ECOD

ECOD/Domains/e4od5D1

e4od5D1

UID: 001283751

PDB

Range: D:2-275
PDB: 4OD5 chain D(all domains)
UniProt: Q9YBM8 (all domains)
Gene: ubiA

Molecule: 4-hydroxybenzoate octaprenyltransferase

3D Structure

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Related Domains

Browse other domains in UbiA →

Classification

AArchitecturealpha bundles(a.7)

XX-groupTerpenoid synthases(141)

HH-groupTerpenoid synthases(141.1)

TT-groupTerpenoid synthases(141.1.1)

FFamilyUbiA(141.1.1.3)

Ligands

in contact, ≤ 4 Å

S-[(2E)-3,7-DIMETHYLOCTA-2,6-DIENYL] TRIHYDROGENTHIODIPHOSPHATEGST
drugDrugBank DB04702
4-hydroxybenzoic acidPHB
drugDrugBank DB04242

Pfam Families

UbiA prenyltransferase family

ClanCL0613Terp_synthase

External Links

ECOD PDB View: 4OD5 RCSB PDB: 4OD5 PDBe: 4OD5 UniProt: Q9YBM8

Downloads

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Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.