ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4jf0B1 - ECOD Domain | ECOD

ECOD/Domains/e4jf0B1

e4jf0B1

UID: 001284074

PDB

Range: B:307-405
PDB: 4JF0 chain B(all domains)
UniProt: P40732 (all domains)
Gene: argD

Molecule: Acetylornithine/succinyldiaminopimelate aminotransferase

3D Structure

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Related Domains

Browse other domains in Aminotran_3 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupC-terminal domain in some PLP-dependent transferases(3016)

HH-groupC-terminal domain in some PLP-dependent transferases(3016.1)

TT-groupC-terminal domain in some PLP-dependent transferases(3016.1.1)

FFamilyAminotran_3(3016.1.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Acetate, 1,2-ETHANEDIOL)

AcetateACT
DrugBank DB14511
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00202Aminotran_3

Aminotransferase class-III

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 4JF0 RCSB PDB: 4JF0 PDBe: 4JF0 UniProt: P40732

Downloads

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