ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4mlvA2 - ECOD Domain | ECOD

ECOD/Domains/e4mlvA2

e4mlvA2

UID: 001284428

PDB

Range: A:219-309
PDB: 4MLV chain A(all domains)
UniProt: Q8GCA8 (all domains)
Gene: hemC

Molecule: Porphobilinogen deaminase

3D Structure

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Related Domains

Browse other domains in Porphobil_deamC →

Classification

AArchitecturea+b two layers(a.11)

XX-groupdsRBD-like(330)

HH-groupPorphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain(330.4)

TT-groupPorphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain(330.4.1)

FFamilyPorphobil_deamC(330.4.1.1)

Ligands

in contact, ≤ 4 Å

Dipyrromethane CofactorDPM
drugDrugBank DB04517
3-[(5S)-5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-2-oxo-2,5-dihydro-1H-pyrrol-3-yl]propanoic acid29P

Shown in the structure viewer.

Pfam Families

PF03900Porphobil_deamC

Porphobilinogen deaminase, C-terminal domain

External Links

ECOD PDB View: 4MLV RCSB PDB: 4MLV PDBe: 4MLV UniProt: Q8GCA8

Downloads

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Drug annotations from DrugDomain.