ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4p7cB1 - ECOD Domain | ECOD

ECOD/Domains/e4p7cB1

e4p7cB1

UID: 001285199

PDB

Range: B:1-319
PDB: 4P7C chain B(all domains)
UniProt: Q87XG5 (all domains)
Gene: cmoB

Molecule: tRNA (mo5U34)-methyltransferase

3D Structure

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Related Domains

Browse other domains in Methyltransf_9 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_9(2003.1.5.64)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08003Methyltransf_9

Protein of unknown function (DUF1698)

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4P7C RCSB PDB: 4P7C PDBe: 4P7C UniProt: Q87XG5

Downloads

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