ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4lmhD2 - ECOD Domain | ECOD

ECOD/Domains/e4lmhD2

e4lmhD2

UID: 001285596

PDB

Range: D:554-735
PDB: 4LMH chain D(all domains)
UniProt: Q8EG33 (all domains)
Gene: omcA

Molecule: Extracellular iron oxide respiratory system surface decaheme cytochrome c component OmcA

3D Structure

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Related Domains

Browse other domains in Mtrc-MtrF_II-IV_dom →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupMultiheme cytochromes(139)

HH-groupOuter membrane cytochrome MtrF(139.4)

TT-groupOuter membrane cytochrome MtrF(139.4.1)

FFamilyMtrc-MtrF_II-IV_dom(139.4.1.1)

Ligands

in contact, ≤ 4 Å

Ferroheme CHEC
drugDrugBank DB03317
Calcium ionCA
metalwithin 5 Å only

+ 1 additive (Dimethyl sulfoxide)

Pfam Families

PF22113Mtrc-MtrF_II-IV_dom

Outer membrane cytochrome MtrC/MtrF-like, domains II/IV

ClanCL0317Multiheme_cytos

External Links

ECOD PDB View: 4LMH RCSB PDB: 4LMH PDBe: 4LMH UniProt: Q8EG33

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Dimethyl sulfoxideDMS

DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.