ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4l2zB1 - ECOD Domain | ECOD

ECOD/Domains/e4l2zB1

e4l2zB1

UID: 001286288

PDB

Range: B:1-404
PDB: 4L2Z chain B(all domains)
UniProt: Q980S9 (all domains)
Gene: mat

Molecule: S-adenosylmethionine synthase

3D Structure

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Related Domains

Browse other domains in AdoMet_Synthase →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-lytic protease prodomain-like(327)

HH-groupS-adenosylmethionine synthetase(327.17)

TT-groupS-adenosylmethionine synthetase(327.17.1)

FFamilyAdoMet_Synthase(327.17.1.2)

Ligands

in contact, ≤ 4 Å

DiphosphateDPO
Magnesium ionMG
metal
[(3S)-3-amino-3-carboxypropyl]{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}ethylsulfoniumS7M

Pfam Families

PF01941AdoMet_Synthase

S-adenosylmethionine synthetase (AdoMet synthetase)

External Links

ECOD PDB View: 4L2Z RCSB PDB: 4L2Z PDBe: 4L2Z UniProt: Q980S9

Downloads

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+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.