ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ncjA1 - ECOD Domain | ECOD

ECOD/Domains/e4ncjA1

e4ncjA1

UID: 001286610

RepresentativePDB

Range: A:1-147,A:738-882
PDB: 4NCJ chain A(all domains)
UniProt: P58301 (all domains)
Gene: rad50

Molecule: DNA double-strand break repair Rad50 ATPase

3D Structure

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Related Domains

Browse other domains in SMC_N, AAA_15, AAA_21 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilySMC_N, AAA_15, AAA_21(2004.1.1.478)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Beryllium trifluoride ionBEF
Magnesium ionMG

Pfam Families

RecF/RecN/SMC N terminal domain

ClanCL0023P-loop_NTPase

AAA ATPase domain

ClanCL0023P-loop_NTPase

AAA domain, putative AbiEii toxin, Type IV TA system

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 4NCJ RCSB PDB: 4NCJ PDBe: 4NCJ UniProt: P58301

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.