ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4q60B1 - ECOD Domain | ECOD

ECOD/Domains/e4q60B1

e4q60B1

UID: 001289499

PDB

Range: B:2-148
PDB: 4Q60 chain B(all domains)
UniProt: B3D6W2 (all domains)
Gene: prdF

Molecule: PROLINE RACEMASE

3D Structure

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Related Domains

Browse other domains in Pro_racemase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupDiaminopimelate epimerase-like(286)

HH-groupDiaminopimelate epimerase-like(286.1)

TT-groupDiaminopimelate epimerase-like(286.1.1)

FFamilyPro_racemase(286.1.1.4)

Ligands

in contact, ≤ 4 Å

Pyrrole-2-CarboxylatePYC
drugDrugBank DB02543

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF05544Pro_racemase

Proline racemase

ClanCL0288DAP_epimerase

External Links

ECOD PDB View: 4Q60 RCSB PDB: 4Q60 PDBe: 4Q60 UniProt: B3D6W2

Downloads

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Drug annotations from DrugDomain.