ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3mdiA1 - ECOD Domain | ECOD

ECOD/Domains/e3mdiA1

e3mdiA1

UID: 001289945

PDB

Range: A:29-227
PDB: 3MDI chain A(all domains)
UniProt: O43809 (all domains)
Gene: NUDT21

Molecule: Cleavage and polyadenylation specificity factor subunit 5

3D Structure

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Related Domains

Browse other domains in NUDIX_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupNudix(221.4)

TT-groupNudix(221.4.1)

FFamilyNUDIX_2(221.4.1.8)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13869NUDIX_2

Nucleotide hydrolase

ClanCL0261NUDIX

External Links

ECOD PDB View: 3MDI RCSB PDB: 3MDI PDBe: 3MDI UniProt: O43809

Downloads

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