ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2r5sB1 - ECOD Domain | ECOD

ECOD/Domains/e2r5sB1

e2r5sB1

UID: 001290103

PDB

Range: B:114-284
PDB: 2R5S chain B(all domains)
UniProt: Q87RI8 (all domains)
Gene: VP0806

Molecule: Uncharacterized protein VP0806

3D Structure

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Related Domains

Browse other domains in TPR_19,TPR_20 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyTPR_19,TPR_20(109.4.1.211)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Acetate, 2-(N-morpholino)ethanesulfonic acid, 1,2-ETHANEDIOL)

AcetateACT
DrugBank DB14511
2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Pfam Families

Tetratricopeptide repeat

ClanCL0020TPR

Tetratricopeptide repeat

ClanCL0020TPR

External Links

ECOD PDB View: 2R5S RCSB PDB: 2R5S PDBe: 2R5S UniProt: Q87RI8

Downloads

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1,2-ETHANEDIOL

Shown in the structure viewer. Drug annotations from DrugDomain.