ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4cdbA2 - ECOD Domain | ECOD

ECOD/Domains/e4cdbA2

e4cdbA2

UID: 001290658

PDB

Range: A:414-526
PDB: 4CDB chain A(all domains)
UniProt: G2K2K4 (all domains)

Molecule: LISTERIOLYSIN O

3D Structure

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Related Domains

Browse other domains in Thiol_cytolys_C →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupPerfringolysin O beta sandwich domain(11.15)

TT-groupPerfringolysin O beta sandwich domain(11.15.1)

FFamilyThiol_cytolys_C(11.15.1.1)

Ligands

in contact, ≤ 4 Å

Tris(Hydroxyethyl)AminomethaneTAM
drugDrugBank DB04237
Sodium ionNA
metal

+ 1 additive (Acetate ion)

Acetate ionACT

Pfam Families

PF17440Thiol_cytolys_C

Thiol-activated cytolysin beta sandwich domain

External Links

ECOD PDB View: 4CDB RCSB PDB: 4CDB PDBe: 4CDB UniProt: G2K2K4

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.