ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ccjB1 - ECOD Domain | ECOD

ECOD/Domains/e4ccjB1

e4ccjB1

UID: 001291230

PDB

Range: B:183-500
PDB: 4CCJ chain B(all domains)
UniProt: Q9H6W3 (all domains)
Gene: RIOX1

Molecule: BIFUNCTIONAL LYSINE-SPECIFIC DEMETHYLASE AND HISTIDYL-HYDROXYLASE NO66

3D Structure

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Related Domains

Browse other domains in JmjC_2 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC_2(10.12.1.40)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

JmjC domain

ClanCL0029Cupin

External Links

ECOD PDB View: 4CCJ RCSB PDB: 4CCJ PDBe: 4CCJ UniProt: Q9H6W3

Downloads

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