ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4cckB2 - ECOD Domain | ECOD

ECOD/Domains/e4cckB2

e4cckB2

UID: 001291239

PDB

Range: B:501-639
PDB: 4CCK chain B(all domains)
UniProt: Q9H6W3 (all domains)
Gene: RIOX1

Molecule: BIFUNCTIONAL LYSINE-SPECIFIC DEMETHYLASE AND HISTIDYL-HYDROXYLASE NO66

3D Structure

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Related Domains

Browse other domains in RIOX1_C_WH →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupwinged helix domain(101.1.2)

FFamilyRIOX1_C_WH(101.1.2.194)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF21233WHD_RIOX1

Ribosomal oxygenase 1, C-terminal winged helix domain

ClanCL0123HTH

External Links

ECOD PDB View: 4CCK RCSB PDB: 4CCK PDBe: 4CCK UniProt: Q9H6W3

Downloads

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