ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ogqH1 - ECOD Domain | ECOD

ECOD/Domains/e4ogqH1

e4ogqH1

UID: 001291707

PDB

Range: H:1-29
PDB: 4OGQ chain H(all domains)
UniProt: P61048 (all domains)
Gene: petN

Molecule: Cytochrome b6-f complex subunit 8

3D Structure

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Related Domains

Browse other domains in PetN →

Classification

AArchitectureextended segments(a.20)

XX-groupPetN subunit of the cytochrome b6f complex(5026)

HH-groupPetN subunit of the cytochrome b6f complex(5026.1)

TT-groupPetN subunit of the cytochrome b6f complex(5026.1.1)

FFamilyPetN(5026.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Ferroheme CHEC
drugDrugBank DB03317within 5 Å only

Pfam Families

PetN

External Links

ECOD PDB View: 4OGQ RCSB PDB: 4OGQ PDBe: 4OGQ UniProt: P61048

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(1S,8E,1'R,8'Z)-1,1'-{[(2S)-3-hydroxypropane-1,2-diyl]bis(oxy)}bisoctadec-8-en-1-ol

(1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate7PH

Shown in the structure viewer. Drug annotations from DrugDomain.