ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4oi4C2 - ECOD Domain | ECOD

ECOD/Domains/e4oi4C2

e4oi4C2

UID: 001291717

PDB

Range: C:19-101
PDB: 4OI4 chain C(all domains)
UniProt: Q08685 (all domains)
Gene: CLP1

Molecule: mRNA cleavage and polyadenylation factor CLP1

3D Structure

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Related Domains

Browse other domains in CLP1_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupProtein CLP1 jelly-roll domain(10.34)

TT-groupProtein CLP1 jelly-roll domain(10.34.1)

FFamilyCLP1_N(10.34.1.1)

Ligands

in contact, ≤ 4 Å

ATPATP
drugDrugBank DB00171

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

N-terminal beta-sandwich domain of polyadenylation factor

External Links

ECOD PDB View: 4OI4 RCSB PDB: 4OI4 PDBe: 4OI4 UniProt: Q08685

Downloads

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Drug annotations from DrugDomain.