ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4cdnB1 - ECOD Domain | ECOD

ECOD/Domains/e4cdnB1

e4cdnB1

UID: 001292094

PDB

Range: B:3-187,B:221-236
PDB: 4CDN chain B(all domains)
UniProt: Q8PYK9 (all domains)
Gene: MM_0852

Molecule: DEOXYRIBODIPYRIMIDINE PHOTOLYASE

3D Structure

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Related Domains

Browse other domains in DNA_photolyase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilyDNA_photolyase(2005.1.1.9)

Ligands

in contact, ≤ 4 Å

1-deoxy-1-(8-hydroxy-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-D-ribitolFO1

+ 2 additives (Sulfate ion, Glycerol)

Sulfate ionSO4
DrugBank DB14546
Glycerol

Pfam Families

PF00875DNA_photolyase

DNA photolyase

ClanCL0039HUP

External Links

ECOD PDB View: 4CDN RCSB PDB: 4CDN PDBe: 4CDN UniProt: Q8PYK9

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.