ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4nz6A1 - ECOD Domain | ECOD

ECOD/Domains/e4nz6A1

e4nz6A1

UID: 001293041

PDB

Range: A:83-394
PDB: 4NZ6 chain A(all domains)
UniProt: Q9Y606 (all domains)
Gene: PUS1

Molecule: tRNA pseudouridine synthase A, mitochondrial

3D Structure

Loading viewer...

Related Domains

Browse other domains in PseudoU_synth_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupPseudouridine synthase(304.102)

TT-groupPseudouridine synthase(304.102.1)

FFamilyPseudoU_synth_1(304.102.1.3)

Ligands

in contact, ≤ 4 Å

D-LysineDLY
drugDrugBank DB03252

+ 2 additives (Triethylene glycol, 1,2-ETHANEDIOL)

Triethylene glycolPGE
DrugBank DB02327

Pfam Families

PF01416PseudoU_synth_1

tRNA pseudouridine synthase

ClanCL0649PseudoU_synth

External Links

ECOD PDB View: 4NZ6 RCSB PDB: 4NZ6 PDBe: 4NZ6 UniProt: Q9Y606

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOL

Shown in the structure viewer. Drug annotations from DrugDomain.