ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4oxdD1 - ECOD Domain | ECOD

ECOD/Domains/e4oxdD1

e4oxdD1

UID: 001293090

PDB

Range: D:-2-237
PDB: 4OXD chain D(all domains)
UniProt: Q8DQQ1 (all domains)
Gene: spr0554

Molecule: LdcB LD-carboxypeptidase

3D Structure

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Related Domains

Browse other domains in VanY →

Classification

AArchitecturea+b two layers(a.11)

XX-groupHedgehog/DD-peptidase(307)

HH-groupHedgehog/DD-peptidase(307.1)

TT-groupHedgehog/DD-peptidase(307.1.1)

FFamilyVanY(307.1.1.3)

Ligands

in contact, ≤ 4 Å

LysineLYS
drugDrugBank DB00123within 5 Å only
Chloride ionCL
Zinc ionZN

Pfam Families

D-alanyl-D-alanine carboxypeptidase

ClanCL0170Peptidase_MD

External Links

ECOD PDB View: 4OXD RCSB PDB: 4OXD PDBe: 4OXD UniProt: Q8DQQ1

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.