ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4oi0A1 - ECOD Domain | ECOD

ECOD/Domains/e4oi0A1

e4oi0A1

UID: 001296388

PDB

Range: A:83-311
PDB: 4OI0 chain A(all domains)
UniProt: P52874 (all domains)
Gene: clpf-1

Molecule: Protein clpf-1

3D Structure

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Related Domains

Browse other domains in CLP1_P →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyCLP1_P(2004.1.1.211)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Tetrafluoroaluminate IonALF
drugDrugBank DB04444

Pfam Families

mRNA cleavage and polyadenylation factor CLP1 P-loop

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 4OI0 RCSB PDB: 4OI0 PDBe: 4OI0 UniProt: P52874

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sarcosine

drugDrugBank DB12519

Magnesium ionMG

metal

+ 1 additive (Nonaethylene glycol)

Nonaethylene glycol2PE

Shown in the structure viewer. Drug annotations from DrugDomain.