ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ojrA1 - ECOD Domain | ECOD

ECOD/Domains/e4ojrA1

e4ojrA1

UID: 001297112

PDB

Range: A:58-207
PDB: 4OJR chain A(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: HIV-1 Integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

(2S)-tert-butoxy[4-(8-fluoro-5-methyl-3,4-dihydro-2H-chromen-6-yl)-2-methyl-1-oxo-1,2-dihydroisoquinolin-3-yl]ethanoic acid2SQ

+ 2 additives (Sulfate ion, Cacodylate ion)

Sulfate ionSO4
DrugBank DB14546
Cacodylate ion

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 4OJR RCSB PDB: 4OJR PDBe: 4OJR UniProt: P03366

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.