ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1dpeA2 - ECOD Domain | ECOD

ECOD/Domains/e1dpeA2

e1dpeA2

UID: 001298152

RepresentativePDB

Range: A:16-156
PDB: 1DPE chain A(all domains)
UniProt: P23847 (all domains)
Gene: dppA

Molecule: DIPEPTIDE-BINDING PROTEIN

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupOligo-peptide binding protein (OPPA) insertion domain(304.136)

TT-groupOligo-peptide binding protein (OPPA) insertion domain(304.136.1)

FFamilySBP_bac_5(304.136.1.1)

Ligands

in contact, ≤ 4 Å

Cadmium ionCD
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 1DPE RCSB PDB: 1DPE PDBe: 1DPE UniProt: P23847

Downloads

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