ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4nyfB1 - ECOD Domain | ECOD

ECOD/Domains/e4nyfB1

e4nyfB1

UID: 001298449

PDB

Range: B:56-207
PDB: 4NYF chain B(all domains)
UniProt: P0C6F2 (all domains)
Gene: gag-pol

Molecule: Integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

(2S)-tert-butoxy[4-(4-chlorophenyl)-2-methylquinolin-3-yl]ethanoic acid4BI
Cadmium ionCD
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 4NYF RCSB PDB: 4NYF PDBe: 4NYF UniProt: P0C6F2

Downloads

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