ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4pdwC1 - ECOD Domain | ECOD

ECOD/Domains/e4pdwC1

e4pdwC1

UID: 001299882

PDB

Range: C:1-231
PDB: 4PDW chain C(all domains)
UniProt: P03303 (all domains)

Molecule: Genome polyprotein

3D Structure

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Related Domains

Browse other domains in Rhv, Calici_coat →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv, Calici_coat(10.2.1.88)

Ligands

in contact, ≤ 4 Å

4-[(4,5-dimethoxy-2-nitrophenyl)acetyl]benzonitrile2XK

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

picornavirus capsid protein

ClanCL0055Nucleoplasmin

PF00915Calici_coat

Calicivirus coat protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 4PDW RCSB PDB: 4PDW PDBe: 4PDW UniProt: P03303

Downloads

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