ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4q6bA1 - ECOD Domain | ECOD

ECOD/Domains/e4q6bA1

e4q6bA1

UID: 001300167

PDB

Range: A:6-121,A:246-351
PDB: 4Q6B chain A(all domains)
UniProt: B8FZ96 (all domains)
Gene: Dhaf_0110

Molecule: Extracellular ligand-binding receptor

3D Structure

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Related Domains

Browse other domains in Peripla_BP_6 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPeriplasmic binding protein-like I(2007.1.2)

FFamilyPeripla_BP_6(2007.1.2.13)

Ligands

in contact, ≤ 4 Å

LeucineLEU
drugDrugBank DB00149
Calcium ionCA
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer.

Pfam Families

PF13458Peripla_BP_6

Periplasmic binding protein

ClanCL0144Periplas_BP

External Links

ECOD PDB View: 4Q6B RCSB PDB: 4Q6B PDBe: 4Q6B UniProt: B8FZ96

Downloads

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Drug annotations from DrugDomain.