ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1njtD2 - ECOD Domain | ECOD

ECOD/Domains/e1njtD2

e1njtD2

UID: 001304359

PDB

Range: D:1304-1556
PDB: 1NJT chain D(all domains)
UniProt: P16753 (all domains)
Gene: UL80

Molecule: Capsid protein P40

3D Structure

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Related Domains

Browse other domains in Peptidase_S21 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupHerpes virus serine proteinase, assemblin(50)

HH-groupHerpes virus serine proteinase, assemblin(50.1)

TT-groupHerpes virus serine proteinase, assemblin(50.1.1)

FFamilyPeptidase_S21(50.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00716Peptidase_S21

Assemblin (Peptidase family S21)

ClanCL0201Peptidase_SH

External Links

ECOD PDB View: 1NJT RCSB PDB: 1NJT PDBe: 1NJT UniProt: P16753

Downloads

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