ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3l0aA1 - ECOD Domain | ECOD

ECOD/Domains/e3l0aA1

e3l0aA1

UID: 001311130

PDB

Range: A:0-265
PDB: 3L0A chain A(all domains)
UniProt: C4ZCC6 (all domains)
Gene: EUBREC_2131

Molecule: Putative exonuclease

3D Structure

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Related Domains

Browse other domains in DUF3799 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRestriction endonuclease-like(2008)

HH-groupRestriction endonuclease-like(2008.1)

TT-groupRestriction endonuclease-like(2008.1.1)

FFamilyDUF3799(2008.1.1.58)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 2 additives (Tromethamine, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL)

TromethamineTRS
DrugBank DB03754
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL

Pfam Families

PF12684DUF3799

PDDEXK-like domain of unknown function (DUF3799)

ClanCL0236PDDEXK

External Links

ECOD PDB View: 3L0A RCSB PDB: 3L0A PDBe: 3L0A UniProt: C4ZCC6

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.