ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3mdjB1 - ECOD Domain | ECOD

ECOD/Domains/e3mdjB1

e3mdjB1

UID: 001311170

PDB

Range: B:46-250
PDB: 3MDJ chain B(all domains)
UniProt: Q9NZ08 (all domains)
Gene: ERAP1

Molecule: Endoplasmic reticulum aminopeptidase 1

3D Structure

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Related Domains

Browse other domains in Peptidase_M1_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupBaculovirus p35 protein-related(4081)

HH-groupBaculovirus p35 protein-related(4081.1)

TT-groupBaculovirus p35 protein-related(4081.1.1)

FFamilyPeptidase_M1_N(4081.1.1.5)

Ligands

in contact, ≤ 4 Å

UbenimexBES
drugDrugBank DB03424
N-AcetylglucosamineNAG
drugDrugBank DB00141

Shown in the structure viewer.

Pfam Families

PF17900Peptidase_M1_N

Peptidase M1 N-terminal domain

ClanCL0672p35

External Links

ECOD PDB View: 3MDJ RCSB PDB: 3MDJ PDBe: 3MDJ UniProt: Q9NZ08

Downloads

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Drug annotations from DrugDomain.