ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3rm5B2 - ECOD Domain | ECOD

ECOD/Domains/e3rm5B2

e3rm5B2

UID: 001311352

PDB

Range: B:2-298
PDB: 3RM5 chain B(all domains)
UniProt: Q08224 (all domains)
Gene: THI20

Molecule: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase THI20

3D Structure

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Related Domains

Browse other domains in Phos_pyr_kin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRibokinase-like(2003.6)

TT-groupRibokinase-like(2003.6.1)

FFamilyPhos_pyr_kin(2003.6.1.5)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08543Phos_pyr_kin

Phosphomethylpyrimidine kinase

ClanCL0118Ribokinase

External Links

ECOD PDB View: 3RM5 RCSB PDB: 3RM5 PDBe: 3RM5 UniProt: Q08224

Downloads

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