ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1od5A1 - ECOD Domain | ECOD

ECOD/Domains/e1od5A1

e1od5A1

UID: 000001312

RepresentativePDB

Range: A:7-178,A:200-251
PDB: 1OD5 chain A(all domains)
UniProt: P04347 (all domains)
Gene: GY5

Molecule: GLYCININ

3D Structure

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Related Domains

Browse other domains in Cupin_1 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyCupin_1(10.12.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Carbonate ion)

Carbonate ionCO3
DrugBank DB14531

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00190Cupin_1

Cupin

ClanCL0029Cupin

External Links

ECOD PDB View: 1OD5 RCSB PDB: 1OD5 PDBe: 1OD5 UniProt: P04347

Downloads

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