ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4tnkj1 - ECOD Domain | ECOD

ECOD/Domains/e4tnkj1

e4tnkj1

UID: 001312264

PDB

Range: j:7-40
PDB: 4TNK chain j(all domains)
UniProt: P59087 (all domains)
Gene: psbJ

Molecule: Photosystem II reaction center protein J

3D Structure

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Related Domains

Browse other domains in PsbJ →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II reaction center protein J, PsbJ(5031)

HH-groupPhotosystem II reaction center protein J, PsbJ(5031.1)

TT-groupPhotosystem II reaction center protein J, PsbJ(5031.1.1)

FFamilyPsbJ(5031.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Digalactosyl Diacyl Glycerol (Dgdg)DGD
drugDrugBank DB03426

Pfam Families

PsbJ

External Links

ECOD PDB View: 4TNK RCSB PDB: 4TNK PDBe: 4TNK UniProt: P59087

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE

2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONEPL9

Shown in the structure viewer. Drug annotations from DrugDomain.