ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4q35A1 - ECOD Domain | ECOD

ECOD/Domains/e4q35A1

e4q35A1

UID: 001313004

RepresentativePDB

Range: A:25-225
PDB: 4Q35 chain A(all domains)
UniProt: Q83SQ0 (all domains)
Gene: lptD

Molecule: LPS-assembly protein LptD

3D Structure

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Related Domains

Browse other domains in LptD_N →

Classification

AArchitecturebeta meanders(a.2)

XX-groupPeriplasmic lipopolysaccharide transport protein LptA (YhbN)(3523)

HH-groupPeriplasmic lipopolysaccharide transport protein LptA (YhbN)(3523.1)

TT-groupPeriplasmic lipopolysaccharide transport protein LptA (YhbN)(3523.1.1)

FFamilyLptD_N(3523.1.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Sulfate ion, (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Lauryl dimethylamine-n-oxide)

Sulfate ionSO4
DrugBank DB14546
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANEC8E
Lauryl dimethylamine-n-oxideLDA

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

LptA/(LptD N-terminal domain) LPS transport protein

ClanCL0259OstA

External Links

ECOD PDB View: 4Q35 RCSB PDB: 4Q35 PDBe: 4Q35 UniProt: Q83SQ0

Downloads

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